Do mRNA or protein-based COVID-19 boosters provide better protection against severe disease over time?

Checked on December 6, 2025
Disclaimer: Factually can make mistakes. Please verify important information or breaking news. Learn more.

Executive summary

Recent real‑world evidence and reviews show mRNA boosters generally produce higher estimates of protection against hospitalization in older adults than studies that mixed mRNA and protein‑based boosters (pooled vaccine effectiveness for mRNA XBB1.5‑adapted boosters ≈56% against hospitalization in ≥65s; studies mixing mRNA and protein boosters showed lower VE of 21–47%) [1]. Immunology and short‑term antibody data find mRNA vaccines trigger robust and fast immune activation and that boosters restore waning protection, while protein (Novavax) boosters produce similar antibody levels at some follow‑ups and may be better tolerated—head‑to‑head durability data beyond months remain limited [2] [3] [4].

1. What the big studies say: mRNA tends to show higher VE for severe disease in older adults

Independent reviews report that cohort and case‑control studies of updated mRNA XBB1.5‑adapted boosters in adults ≥65 found pooled vaccine effectiveness around 56% (CI 51–60) against hospitalization, whereas studies that combined people who received mRNA or protein boosters generally reported lower effectiveness (21–47%) [1]. That comparison comes from pooled observational data and suggests mRNA boosters have led to stronger measured protection against severe outcomes in the oldest age group in available analyses [1].

2. Immunology and short‑term response: mRNA elicits faster, robust activation; boosters restore waning immunity

Laboratory and clinical summaries emphasize that mRNA vaccines elicit robust immune responses and trigger early immune activation within hours after dosing, which likely explains transient side effects and rapid antibody rises; real‑world data show protection from primary mRNA series wanes but is restored by booster doses [2] [3]. Those restored levels translate into improved protection against severe disease in the months following a booster, per Yale Medicine and immunology reporting [3].

3. Protein‑based boosters: similar antibody levels at some timepoints, perhaps gentler reactogenicity

Several studies and commentaries found that protein‑subunit boosters such as Novavax produced neutralizing‑antibody levels comparable to mRNA boosters at certain post‑boost timepoints (for example, similar neutralizing antibodies three months after boosting in a NPJ Vaccines report) and tended to have lower short‑term side effects and possibly lower myocarditis risk in some analyses [4] [5]. Science and Scientific American reporting emphasize mixing‑and‑matching regimens can equalize immune responses, but longer follow‑up for durability is still pending [4] [5].

4. Why comparisons are messy: variants, prior infection, and study design drive results

Analysts warn that variant changes, prior infections, repeated boosting, and heterogenous study designs make simple platform comparisons unreliable; different studies used different circulating strains, endpoints, and populations, so VE ranges (21–56% and other numbers) reflect a mix of circumstances rather than one definitive platform superiority [4] [1]. The NEJM review and commentaries explicitly flag these confounders and the need for ongoing independent evidence review [1] [4].

5. Safety and tolerability shape real‑world choices as much as effectiveness

Protein‑based boosters appear to cause less immediate inflammation and fewer short‑term systemic reactions for some people, and some sources note a potentially lower myocarditis risk compared with mRNA in young men, making them an attractive option for people who experienced side effects from mRNA doses [2] [5]. Regulatory bodies still emphasize that updated mRNA vaccines meet safety and effectiveness standards for preventing serious COVID outcomes [6].

6. What we don’t know yet: long‑term durability and head‑to‑head severe‑disease comparisons beyond months

Available sources document antibody and VE differences over weeks to a few months and some pooled observational estimates, but long‑term (12‑month+) head‑to‑head randomized data directly comparing mRNA vs. protein boosters for sustained protection against hospitalization and death are not yet conclusive in these reports; the NPJ study noted 12‑month follow‑up results were still pending at the time of reporting [4] [1]. Not found in current reporting: definitive long‑term randomized comparisons proving one platform’s superiority over the other for durable protection against severe disease.

7. Bottom line for patients and policymakers: choose on risk profile, timing, and availability

For older adults and those at higher risk, pooled observational evidence favors updated mRNA boosters for higher measured protection against hospitalization in the studied periods [1]. For people prioritizing lower short‑term reactogenicity or with prior adverse reactions to mRNA, protein boosters produce comparable antibody responses at some timepoints and are a reasonable alternative—especially in mix‑and‑match regimens [5] [4]. Clinicians, public‑health officials, and patients should weigh age, prior infection, side‑effect history, variant circulation, and the limited duration of current VE estimates when deciding on boosters [3] [1].

Limitations: this account uses the provided sources only and relies largely on pooled observational studies and short‑ to medium‑term immunologic follow‑ups; long‑term durability and uniform head‑to‑head severe‑disease outcomes across platforms remain to be reported in the literature cited [1] [4].

Want to dive deeper?
How do mRNA and protein COVID-19 boosters compare in preventing hospitalization over 6-12 months?
Do hybrid immunity and prior infection change the effectiveness gap between mRNA and protein boosters?
What are observed differences in side effects and safety profiles between mRNA and protein COVID-19 boosters?
How do variant-updated mRNA boosters perform versus ancestral or variant-adapted protein boosters against severe disease?
What do real-world observational studies and randomized trials say about durability of protection after mRNA vs protein boosters?