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What do recent studies say about long-term efficacy and safety of Pfizer vs Janssen vaccines?

Checked on November 12, 2025
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Executive Summary

Recent studies and public-health reports find Pfizer’s mRNA vaccine provides higher initial protection than Janssen’s adenovirus‑vector vaccine after a primary series, both show waning over months, and booster doses restore high protection for both platforms. Safety profiles differ in rare adverse-event patterns—mRNA vaccines are linked to vaccine-associated myocarditis while adenovirus vaccines show rare thrombosis with thrombocytopenia and Guillain–Barré signals—but regulators conclude benefits exceed risks [1] [2] [3].

1. Why efficacy comparisons favor mRNA early but boosters level the field

Multiple surveillance and cohort analyses show Pfizer/Moderna mRNA vaccines reached higher effectiveness against infection and hospitalization after the primary series than Janssen; reported effectiveness ranges were about 71–90% for mRNA versus roughly 58–83% for Janssen in early studies cited by public-health authorities [1]. The large Hungarian HUN‑VE 3 study during the Delta wave found Pfizer’s effectiveness against infection in older adults was ~88–93% within 14–120 days after the second dose, while Janssen’s single-dose primary effectiveness against infection and severe outcomes was substantially lower in comparable windows [2]. However, both vaccine types experienced pronounced waning within months, driving the public‑health push for booster doses [2].

2. Boosters rewrite the protection story—rapid restoration across platforms

Real‑world data show booster doses substantially restore protection against infection and severe disease for both platforms. HUN‑VE 3 reported that a Pfizer booster returned protection against infection and hospitalization to high levels (~88–95% against infection and ~95–100% against severe outcomes) and that Janssen boosters also produced large gains, in some analyses approaching parity with mRNA boosters for preventing hospitalization and death [2]. The U.S. advisory analyses likewise documented neutralizing and binding antibody increases after homologous boosters—mRNA boosters raised neutralization titers 1.8–3.3‑fold and Janssen boosters produced large fold‑rises in spike‑binding antibodies—supporting the mechanistic basis for restored clinical protection [1].

3. What the safety record shows: different rare risks, similar benefit calculus

Safety surveillance across countries identified distinct rare adverse‑event patterns tied to vaccine platforms. Adenovirus‑vector vaccines (Janssen/J&J) have been associated with thrombosis with thrombocytopenia and rare Guillain–Barré syndrome, while mRNA vaccines have a signal for post‑vaccination myocarditis, especially in younger males. Despite these rare events, public‑health bodies maintain that the overall benefit of vaccination outweighs these risks across adult age groups, a conclusion reflected in policy documents and fact checks [3] [1]. The HUN‑VE effectiveness study did not focus on safety outcomes, leaving detailed comparative long‑term safety attribution to pharmacovigilance systems [2].

4. Limitations and gaps—what recent studies do not settle

Existing analyses emphasize effectiveness and waning but leave important gaps: randomized head‑to‑head long‑term safety trials between Pfizer and Janssen are lacking, safety comparisons rely on passive and active surveillance that can differ by country and time, and many effectiveness studies reflect the Delta period [4] rather than later Omicron sublineages that changed immune‑escape dynamics [2] [5]. Regulatory summaries and manufacturer updates focus on updated mRNA formulations and authorization milestones without providing direct Janssen versus Pfizer trial comparisons, limiting direct inference on relative long‑term safety from those documents [6] [7].

5. The big picture: policy, individual choice, and continuing monitoring

Policymakers acted on the evidence by recommending mRNA primary regimens and boosters for broad populations while retaining adenovirus options where appropriate; policy reflects early higher mRNA efficacy, waning immunity, strong booster response, and differential rare risks, with ongoing surveillance to update guidance [1] [8]. Individuals weighing vaccine choices should consider initial effectiveness, the near‑universal benefit of boosters, and the distinct rare adverse‑event profiles documented in post‑authorization monitoring. Continued large‑scale, recent comparative studies and transparent pharmacovigilance reporting remain essential to refine long‑term efficacy and safety comparisons [2] [3].

Want to dive deeper?
What are the key differences in side effect profiles between Pfizer and Janssen COVID vaccines?
How do booster doses impact long-term immunity for mRNA vs viral vector vaccines like Pfizer and Janssen?
What do CDC or WHO reports say about waning efficacy of Pfizer versus Janssen vaccines?
Are there studies on rare long-term risks like myocarditis for Pfizer compared to blood clots for Janssen?
How effective are Pfizer and Janssen vaccines against recent COVID variants like Omicron subvariants?