Which government agencies are often associated with the deep state?

Checked on December 1, 2025
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Executive summary

Reports and analysts most frequently link intelligence and law‑enforcement agencies — especially the CIA and FBI — plus parts of the Justice Department, Department of Homeland Security and the broader federal bureaucracy, to claims about a U.S. “deep state” [1] [2]. Reuters documents show a recent interagency group drew participants from ODNI, CIA, DOJ, DOD, FBI, DHS, IRS and FCC — illustrating which agencies are invoked when critics allege institutional resistance or “weaponization” [2].

1. Who people name when they say “deep state” — and why it matters

When Americans talk about a “deep state,” sources and commentators most often point to intelligence and security institutions — the intelligence community broadly, the CIA, and the FBI — and to senior officials inside the Justice Department and DHS, because those agencies hold investigative and secrecy powers that could be used to frustrate elected leaders [1] [3]. Reporting and commentary note that the phrase is also applied more widely to the federal bureaucracy — regulators, program managers and career civil servants — when critics mean “entrenched institutional interests” rather than a literal conspiratorial shadow government [4] [5].

2. Recent reporting: an interagency cast list tied to political fights

Reuters documented an Interagency Weaponization Working Group that included officials from the Office of the Director of National Intelligence, the CIA, Justice and Defense Departments, the FBI, DHS, IRS and FCC, among others — a snapshot of which agencies surface in current political battles over alleged “deep state” activity [2]. That reporting frames these agencies not as a uniform plot but as the concrete institutions that both critics and defenders point to when debating whether permanent bureaucracies resist or protect democratic norms [2] [1].

3. Scholars’ pushback: bureaucracy ≠ conspiratorial “deep state”

Academic and policy analysts caution that the U.S. administrative state is mostly transparent, legally established and internally diverse; they argue critics conflate routine bureaucratic checks, agency expertise and political friction with a secretive, extraconstitutional power center [4] [1]. Scholarship cited in encyclopedic summaries stresses that what many call the “deep state” in the U.S. is better understood as the permanent civil service that constrains or corrects executive overreach, not a clandestine parallel government [4] [1].

4. Media, think tanks and advocacy: competing framings

Think tanks and advocacy groups present competing frames: some conservative outlets and activists treat specific agencies — especially the FBI and DOJ — as politically hostile actors that leak and weaponize investigations [3]. By contrast, institutions like Brookings argue that the real structural issues lie in contractor networks, improper payments and bureaucratic complexity rather than a conspiratorial inner circle inside the federal bureaucracy [6].

5. How policy moves have made the debate concrete

Policy initiatives and personnel changes have turned abstract claims into concrete fights: executive orders, reclassification proposals (e.g., Schedule F in prior cycles) and the creation of new efficiency offices have been portrayed by proponents as tools to dismantle the “deep state” and by critics as efforts to politicize the civil service [7] [8]. Reuters’ coverage of administration plans to place political loyalists and create oversight units underscores how administrative changes focus attention on specific agencies named in “deep state” discourse [8] [2].

6. What sources do and do not show — limits of the record

Available sources document who critics and administrations cite as part of the “deep state” (CIA, FBI, DOJ, DHS, ODNI, and wider federal agencies) and show concrete interagency coordination that critics label as targeting perceived opponents [2] [1]. Sources do not prove the existence of an organized, extralegal shadow government controlling policy decisions beyond normal institutional processes; scholars and encyclopedic accounts emphasize the difference between entrenched bureaucratic interests and a conspiratorial deep state [4] [1].

7. How readers should weigh competing claims

Readers should treat agency lists as descriptive of where power and secrecy reside — why CIA, FBI, DOJ and DHS recur in claims — while remembering analysts dispute the leap from institutional friction to an organized clandestine power structure [1] [4]. Examine specific allegations against named offices, look for documentary evidence of extralegal action, and note when political actors use “deep state” as a rhetorical device to justify personnel purges or policy centralization [2] [8].

Limitations: this analysis relies solely on the supplied reporting and summaries; it does not adjudicate any unproven criminal or conspiratorial claims beyond what those sources report [2] [4] [1].

Want to dive deeper?
Which agencies do scholars cite when discussing the deep state in the United States?
How have intelligence agencies like the CIA and NSA been linked to deep state theories?
What historical events led to public suspicion of the FBI and military as part of a deep state?
How do whistleblower reports and leaks shape perceptions of agencies being part of a deep state?
What oversight mechanisms exist to prevent government agencies from acting independently of elected officials?